PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_861C1D473.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 710aa    MW: 83421.9 Da    PI: 8.4204
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_861C1D473.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.79.1e-2420111188
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA e GFsvrk + +  + n++i+ r++vCs eg ree++ k   ++++r++r+ tr+gCkak+++ +   +g+w v+++  e
  Traes_3AL_861C1D473.1  20 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSHEGCREEKHMKrkrEDRKRKPRNITRVGCKAKFVIARVAkTGRWFVKDFIDE 107
                            6*****************************************99988777889999***************99988************ PP

                   FAR1  85 HnHe 88 
                            HnH+
  Traes_3AL_861C1D473.1 108 HNHP 111
                            ***7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2120111IPR004330FAR1 DNA binding domain
PfamPF105511.8E-35235329IPR018289MULE transposase domain
PROSITE profilePS509669.977513552IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MAEYDDIVSK MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSHEGCR  60
EEKHMKRKRE DRKRKPRNIT RVGCKAKFVI ARVAKTGRWF VKDFIDEHNH PPAPRDLACF  120
LRSHRRISDK QKTDIIEMES VGIRKHKIMD VLCMQYGGYD HVGCMTRDIY NFCHRYKQET  180
VAAGDAQMVI RHMMARQERD PDYFFKYLVD KDGHLKGLFW SDTQSRLDYE AFGDVVVFDS  240
TYRTNKYNLP FVPFVGLNHH RSTVIFGCGI ISHETNEVYE WMLQTFSEAM SQKHPISVIT  300
DGNLAMQRAI RMVWPDSYHR LCVWHIQQNI VRHLHDDEVR EEFRSFIYDS SSIEEHERKW  360
IEFLRRNEVT SEESWLHQMY QMRKLWCAPY LVGRCFLGLS SNQRSESLNS MLHTHLEGKM  420
TLFDMLEHYE CCLSGRRLNE AILDIVALQS IPFTDADASS LEKHVVRVFT PCMFQLVRWS  480
INAVSKCVIS EILDAWELTT YVVAKIDRRE KKFEVRCEMK EGSLYRISCS CRKLECLGTP  540
CSHIFYILGI RQVEVLPRCC VPMRWTMSAK SAFPPTRKSE MYDYSASLVR YRELRNLSHV  600
ACFRACQSSE EYQRLKMILS EQVGSKESSR GQEECIRFGP VLPQTTEIDC GDLEKVLDPV  660
HVQGRGAPKK RLQAKMKKQR SKRKCGYCGV EGHDRRTCNK LKEVSNMSNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774KREDRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5CEG30.0W5CEG3_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-94FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]